| 1. Round | 23/09/2023 | Makedonikos FC | - | AEP Iraklis FC | 0:0 | ||||
| 2. Round | 02/10/2023 | Aiolikos Mytilinis | - | Makedonikos FC | 1:3 | ||||
| 10. Round | 20/11/2023 | Niki Volou FC | - | Makedonikos FC | 1:2 | ||||
| 11. Round | 26/11/2023 | Makedonikos FC | - | Apollon Pontou | 3:1 | ||||
| 12. Round | 04/12/2023 | Kampaniakos FC | - | Makedonikos FC | 1:2 | ||||
| 13. Round | 09/12/2023 | Makedonikos FC | - | AEK Athen II | 1:1 | ||||
| 14. Round | 18/12/2023 | AEP Iraklis FC | - | Makedonikos FC | 5:1 | ||||
| 15. Round | 03/01/2024 | Makedonikos FC | - | Aiolikos Mytilinis | 1:1 | ||||
| 16. Round | 07/01/2024 | Makedonikos FC | - | Kozani FC | 0:0 | ||||
| 17. Round | 14/01/2024 | Anagennisi Karditsa | - | Makedonikos FC | 0:1 | ||||
| 18. Round | 21/01/2024 | Makedonikos FC | - | AE Lárissa | 0:0 | ||||
| 19. Round | 28/01/2024 | PAOK Saloniki II | - | Makedonikos FC | 2:0 | ||||
| 22. Round | 14/02/2024 | Levadiakos | - | Makedonikos FC | 2:1 | ||||
| 23. Round | 18/02/2024 | Makedonikos FC | - | Niki Volou FC | 0:0 | ||||
| 24. Round | 25/02/2024 | Apollon Pontou | - | Makedonikos FC | 0:3 | ||||
| 25. Round | 04/03/2024 | Makedonikos FC | - | Kampaniakos FC | 0:1 | ||||
| 26. Round | 11/03/2024 | AEK Athen II | - | Makedonikos FC | 0:0 |
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