| 15. Round | 15/01/1999 | Aris Saloniki | - | OFI Heraklion | 3:1 | ||||
| 16. Round | 22/01/1999 | Paniliakos Pyrgos | - | Aris Saloniki | 3:1 | ||||
| 18. Round | 06/02/1999 | Ethnikos Asteras | - | Aris Saloniki | 0:1 | ||||
| 19. Round | 14/02/1999 | Aris Saloniki | - | PAOK Saloniki | 2:0 | ||||
| 20. Round | 19/02/1999 | Ionikos Nikea | - | Aris Saloniki | 3:0 | ||||
| 21. Round | 27/02/1999 | Panionios GSS | - | Aris Saloniki | 3:2 | ||||
| 23. Round | 13/03/1999 | Panathinaikos | - | Aris Saloniki | 3:1 | ||||
| 24. Round | 20/03/1999 | Aris Saloniki | - | Ethnikos Piraeus | 4:0 |  |
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| 25. Round | 03/04/1999 | Iraklis Saloniki | - | Aris Saloniki | 2:1 | |
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| 27. Round | 24/04/1999 | Olympiakos Piraeus | - | Aris Saloniki | 1:0 | ||||
| 28. Round | 01/05/1999 | Aris Saloniki | - | AEK Athen | 2:0 | ||||
| 29. Round | 08/05/1999 | Aris Saloniki | - | Apollon Smyrnis | 2:1 | ||||
| 31. Round | 15/05/1999 | Aris Saloniki | - | Veria FC | 2:0 | ||||
| 32. Round | 18/05/1999 | OFI Heraklion | - | Aris Saloniki | 2:4 | ||||
| 34. Round | 29/05/1999 | AO Proodeftiki | - | Aris Saloniki | 2:1 | |
Iceland