| 1. Round | 24/08/2003 | Panionios GSS | - | Paniliakos Pyrgos | 3:2 | ||||
| 2. Round | 30/08/2003 | Atromitos | - | Paniliakos Pyrgos | 1:3 | ||||
| 3. Round | 14/09/2003 | Paniliakos Pyrgos | - | Aris Saloniki | 0:0 | ||||
| 4. Round | 21/09/2003 | Olympiakos Piraeus | - | Paniliakos Pyrgos | 1:0 |  |
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| 5. Round | 28/09/2003 | Paniliakos Pyrgos | - | PAOK Saloniki | 1:4 | ||||
| 6. Round | 05/10/2003 | Akratitos Liosion | - | Paniliakos Pyrgos | 2:2 | ||||
| 7. Round | 19/10/2003 | Paniliakos Pyrgos | - | AO Proodeftiki | 4:1 | ||||
| 8. Round | 26/10/2003 | Paniliakos Pyrgos | - | AO Egaleo | 0:0 | ||||
| 9. Round | 02/11/2003 | Skoda Xanthi | - | Paniliakos Pyrgos | 2:1 | |
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| 10. Round | 09/11/2003 | Paniliakos Pyrgos | - | OFI Heraklion | 1:1 | ||||
| 11. Round | 23/11/2003 | GS Kallithea | - | Paniliakos Pyrgos | 2:2 | ||||
| 12. Round | 30/11/2003 | Paniliakos Pyrgos | - | AEK Athen | 1:0 | |
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| 13. Round | 07/12/2003 | Ionikos Nikea | - | Paniliakos Pyrgos | 4:2 | ||||
| 14. Round | 14/12/2003 | Paniliakos Pyrgos | - | Iraklis Saloniki | 1:2 | ||||
| 15. Round | 21/12/2003 | Panathinaikos | - | Paniliakos Pyrgos | 6:3 |
Czech Republic