| 1. Round | 18/07/2015 | MFK Ružomberok | - | MFK Skalica | 1:3 |  |
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| 2. Round | 25/07/2015 | MFK Skalica | - | MFK Zemplín Michalovce | 1:0 | ||||
| 3. Round | 01/08/2015 | FK Senica | - | MFK Skalica | 2:1 | ||||
| 4. Round | 07/08/2015 | MFK Skalica | - | FO ŽP Šport Podbrezová | 0:0 | |
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| 5. Round | 16/08/2015 | MFK Skalica | - | Spartak Trnava | 2:3 | |
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| 6. Round | 22/08/2015 | MFK Skalica | - | Zlaté Moravce | 2:3 | ||||
| 7. Round | 29/08/2015 | Slovan Bratislava | - | MFK Skalica | 4:1 | ||||
| 9. Round | 19/09/2015 | MŠK Žilina | - | MFK Skalica | 2:2 | ||||
| 11. Round | 26/09/2015 | AS Trenčín | - | MFK Skalica | 3:0 | ||||
| 18. Round | 28/11/2015 | MFK Skalica | - | Slovan Bratislava | 0:2 | ||||
| 21. Round | 02/03/2016 | FC DAC 1904 | - | MFK Skalica | 1:0 | ||||
| 23. Round | 12/03/2016 | MFK Ružomberok | - | MFK Skalica | 3:1 | ||||
| 33. Round | 20/05/2016 | AS Trenčín | - | MFK Skalica | 2:1 |
Slovakia