| 1. Round | 06/08/2011 | Gillingham FC | - | Cheltenham Town | 1:0 |  |
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| 4. Round | 20/08/2011 | Gillingham FC | - | Plymouth Argyle | 3:0 |  |
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| 5. Round | 27/08/2011 | Rotherham United | - | Gillingham FC | 3:0 | ||||
| 6. Round | 03/09/2011 | Gillingham FC | - | Shrewsbury Town | 0:1 | ||||
| 7. Round | 10/09/2011 | Gillingham FC | - | Accrington Stanley | 1:1 | |
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| 8. Round | 13/09/2011 | Southend United | - | Gillingham FC | 1:0 | ||||
| 9. Round | 17/09/2011 | Hereford United | - | Gillingham FC | 1:6 | ||||
| 10. Round | 24/09/2011 | Gillingham FC | - | Burton Albion | 3:1 | ||||
| 11. Round | 01/10/2011 | AFC Wimbledon | - | Gillingham FC | 3:1 | ||||
| 12. Round | 08/10/2011 | Gillingham FC | - | Port Vale FC | 1:1 | |
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| 13. Round | 15/10/2011 | Torquay United | - | Gillingham FC | 2:5 | |
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| 14. Round | 22/10/2011 | Gillingham FC | - | Oxford United | 1:0 | ||||
| 15. Round | 25/10/2011 | Swindon Town | - | Gillingham FC | 2:0 | ||||
| 16. Round | 29/10/2011 | Morecambe FC | - | Gillingham FC | 2:1 | ||||
| 17. Round | 05/11/2011 | Gillingham FC | - | Northampton Town | 4:3 | ||||
| 22. Round | 26/12/2011 | Crawley Town | - | Gillingham FC | 1:2 |  |
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| 26. Round | 14/01/2012 | Shrewsbury Town | - | Gillingham FC | 2:0 |
England