| 1. Round | 02/04/1999 | Lok. Nizhni Novgorod | - | FK Saturn | 0:1 | ||||
| 2. Round | 10/04/1999 | Zhemchuzhina Sochi | - | Lok. Nizhni Novgorod | 1:1 | ||||
| 3. Round | 16/04/1999 | Lok. Nizhni Novgorod | - | Lokomotiv Moskva | 0:0 | ||||
| 4. Round | 24/04/1999 | Dinamo Moskva | - | Lok. Nizhni Novgorod | 2:1 | ||||
| 5. Round | 01/05/1999 | Lok. Nizhni Novgorod | - | Krylia Sovetov | 3:0 | ||||
| 6. Round | 08/05/1999 | Alania Vladikavkaz | - | Lok. Nizhni Novgorod | 5:2 |  |
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| 7. Round | 14/05/1999 | Lok. Nizhni Novgorod | - | Uralan Elista | 1:2 | ||||
| 8. Round | 21/05/1999 | Shinnik Yaroslavl | - | Lok. Nizhni Novgorod | 0:1 | |
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| 9. Round | 28/05/1999 | Lok. Nizhni Novgorod | - | Zenit St. Petersburg | 1:0 | ||||
| 10. Round | 12/06/1999 | Spartak Moskva | - | Lok. Nizhni Novgorod | 2:2 | ||||
| 11. Round | 18/06/1999 | Lok. Nizhni Novgorod | - | CSKA Moskva | 0:2 | ||||
| 12. Round | 22/06/1999 | Rotor Volgograd (1929-2005) | - | Lok. Nizhni Novgorod | 2:3 | ||||
| 13. Round | 26/06/1999 | Lok. Nizhni Novgorod | - | Rostselmash Rostov | 0:0 | ||||
| 14. Round | 02/07/1999 | Torpedo Moskva | - | Lok. Nizhni Novgorod | 3:2 | ||||
| 15. Round | 06/07/1999 | Chernomorets Novorossisk | - | Lok. Nizhni Novgorod | 0:1 |
Slovakia