| 9. Round | 17/09/2016 | NK Krško | - | NK Maribor | 1:2 |  |
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| 10. Round | 21/09/2016 | NK Krško | - | Rudar Velenje | 1:0 | ||||
| 12. Round | 02/10/2016 | NK Krško | - | Olimpija Ljubljana | 1:2 | ||||
| 13. Round | 14/10/2016 | ND Gorica | - | NK Krško | 1:1 | ||||
| 14. Round | 22/10/2016 | NK Krško | - | NK Aluminij | 2:2 | ||||
| 15. Round | 29/10/2016 | NK Celje | - | NK Krško | 0:3 | ||||
| 16. Round | 06/11/2016 | NK Krško | - | NK Radomlje | 1:1 | ||||
| 17. Round | 19/11/2016 | NK Krško | - | FC Koper | 0:0 | ||||
| 18. Round | 26/11/2016 | NK Maribor | - | NK Krško | 4:0 | ||||
| 19. Round | 30/11/2016 | Rudar Velenje | - | NK Krško | 2:2 | |
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| 20. Round | 04/12/2016 | NK Krško | - | NK Domžale | 0:0 | ||||
| 22. Round | 26/02/2017 | NK Krško | - | ND Gorica | 1:2 | |
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| 23. Round | 05/03/2017 | NK Aluminij | - | NK Krško | 1:1 | |
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| 31. Round | 29/04/2017 | ND Gorica | - | NK Krško | 0:0 | ||||
| 32. Round | 05/05/2017 | NK Krško | - | NK Aluminij | 1:1 | ||||
| 33. Round | 12/05/2017 | NK Celje | - | NK Krško | 1:2 | ||||
| 34. Round | 16/05/2017 | NK Krško | - | NK Radomlje | 2:0 | ||||
| 35. Round | 21/05/2017 | NK Krško | - | FC Koper | 1:1 | ||||
| 36. Round | 27/05/2017 | NK Maribor | - | NK Krško | 1:0 |
Slovenia