| 2. Round | 24/07/2016 | 1. FC Tatran Prešov | - | MFK Zemplín Michalovce | 0:0 | ||||
| 7. Round | 28/08/2016 | Spartak Myjava | - | 1. FC Tatran Prešov | annull. |  |
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| 8. Round | 10/09/2016 | 1. FC Tatran Prešov | - | FO ŽP Šport Podbrezová | 0:2 | ||||
| 15. Round | 05/11/2016 | FK Senica | - | 1. FC Tatran Prešov | 0:0 | ||||
| 18. Round | 03/12/2016 | 1. FC Tatran Prešov | - | Spartak Myjava | annull. | ||||
| 19. Round | 10/12/2016 | FO ŽP Šport Podbrezová | - | 1. FC Tatran Prešov | 1:1 | ||||
| 25. Round | 02/04/2017 | MŠK Žilina | - | 1. FC Tatran Prešov | 3:0 | ||||
| 26. Round | 07/04/2017 | 1. FC Tatran Prešov | - | FK Senica | 1:0 | ||||
| 27. Round | 16/04/2017 | Spartak Trnava | - | 1. FC Tatran Prešov | 4:0 | ||||
| 28. Round | 03/05/2017 | 1. FC Tatran Prešov | - | Zlaté Moravce | 1:1 |  |
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| 31. Round | 12/05/2017 | Slovan Bratislava | - | 1. FC Tatran Prešov | 3:1 | ||||
| 32. Round | 19/05/2017 | 1. FC Tatran Prešov | - | FC DAC 1904 | 1:1 | ||||
| 33. Round | 27/05/2017 | AS Trenčín | - | 1. FC Tatran Prešov | 4:0 |
Slovakia