| 1. Round | 14/07/2012 | MFK Ružomberok | - | Zlaté Moravce | 3:1 | ||||
| 2. Round | 21/07/2012 | FC Nitra | - | MFK Ružomberok | 1:1 | ||||
| 3. Round | 28/07/2012 | MFK Ružomberok | - | FK Dukla Banská Bystrica | 1:0 | ||||
| 4. Round | 04/08/2012 | 1. FC Tatran Prešov | - | MFK Ružomberok | 2:0 | ||||
| 6. Round | 18/08/2012 | MŠK Žilina | - | MFK Ružomberok | 0:0 | ||||
| 7. Round | 25/08/2012 | MFK Ružomberok | - | Spartak Trnava | 2:2 | ||||
| 12. Round | 05/10/2012 | Zlaté Moravce | - | MFK Ružomberok | 0:0 | ||||
| 14. Round | 20/11/2012 | FK Dukla Banská Bystrica | - | MFK Ružomberok | 0:0 | ||||
| 20. Round | 03/03/2013 | FK Senica | - | MFK Ružomberok | 0:3 |  |
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| 21. Round | 09/03/2013 | MFK Ružomberok | - | AS Trenčín | 1:2 |
Slovakia