| 1. Round | 08/03/2025 | Dukla Banská Bystrica | - | MFK Skalica | 0:2 | ||||
| 2. Round | 15/03/2025 | MFK Skalica | - | AS Trenčín | 1:0 | ||||
| 3. Round | 29/03/2025 | MFK Ružomberok | - | MFK Skalica | 3:2 | ||||
| 4. Round | 05/04/2025 | MFK Skalica | - | MFK Zemplín Michalovce | 1:0 |  |
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| 5. Round | 13/04/2025 | KFC Komárno | - | MFK Skalica | 1:1 | |
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| 7. Round | 27/04/2025 | MFK Skalica | - | KFC Komárno | 0:1 | ||||
| 8. Round | 03/05/2025 | MFK Zemplín Michalovce | - | MFK Skalica | 2:4 | ||||
| 9. Round | 10/05/2025 | MFK Skalica | - | Dukla Banská Bystrica | 3:1 |
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