| 19. Round | 22/02/2009 | NK Zagreb | - | NK Inter Zaprešić | 0:1 | ||||
| 20. Round | 01/03/2009 | NK Inter Zaprešić | - | Hajduk Split | 0:4 | ||||
| 21. Round | 08/03/2009 | Slaven Belupo | - | NK Inter Zaprešić | 1:0 | ||||
| 22. Round | 15/03/2009 | NK Inter Zaprešić | - | NK Osijek | 0:1 | ||||
| 23. Round | 22/03/2009 | HNK Šibenik | - | NK Inter Zaprešić | 4:0 | ||||
| 24. Round | 05/04/2009 | NK Inter Zaprešić | - | Slaven Belupo | 1:0 | ||||
| 25. Round | 11/04/2009 | Dinamo Zagreb | - | NK Inter Zaprešić | 1:0 |  |
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| 26. Round | 19/04/2009 | NK Inter Zaprešić | - | Hajduk Split | 0:2 | |
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| 27. Round | 22/04/2009 | NK Osijek | - | NK Inter Zaprešić | 1:1 | ||||
| 28. Round | 26/04/2009 | NK Inter Zaprešić | - | HNK Cibalia | 0:0 | ||||
| 29. Round | 03/05/2009 | NK Zagreb | - | NK Inter Zaprešić | 1:0 | ||||
| 30. Round | 10/05/2009 | NK Croatia Sesvete | - | NK Inter Zaprešić | 0:3 | ||||
| 31. Round | 17/05/2009 | NK Inter Zaprešić | - | NK Zadar | 2:2 | ||||
| 32. Round | 24/05/2009 | NK Varteks | - | NK Inter Zaprešić | 0:1 | ||||
| 33. Round | 31/05/2009 | NK Inter Zaprešić | - | HNK Rijeka | 3:0 |
Bosnia-Herzegovina