| 7. Round | 25/08/2012 | FC Nitra | - | MFK Košice | 4:1 | ||||
| 8. Round | 01/09/2012 | MŠK Žilina | - | FC Nitra | 1:1 |  |
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| 9. Round | 14/09/2012 | FC Nitra | - | Spartak Trnava | 1:3 | ||||
| 11. Round | 30/09/2012 | FC Nitra | - | FK Senica | 0:1 | ||||
| 13. Round | 20/10/2012 | MFK Ružomberok | - | FC Nitra | 2:1 | |
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| 14. Round | 27/10/2012 | FC Nitra | - | Zlaté Moravce | 1:1 | ||||
| 15. Round | 03/11/2012 | FC Nitra | - | Spartak Myjava | 0:2 |
Slovakia