| 1. Round | 17/07/2016 | FO ŽP Šport Podbrezová | - | Spartak Trnava | 1:1 | ||||
| 2. Round | 24/07/2016 | Spartak Trnava | - | FC DAC 1904 | 2:1 | ||||
| 3. Round | 31/07/2016 | MFK Ružomberok | - | Spartak Trnava | 1:1 | ||||
| 4. Round | 07/08/2016 | Spartak Trnava | - | MŠK Žilina | 1:2 | ||||
| 20. Round | 21/02/2017 | MFK Zemplín Michalovce | - | Spartak Trnava | 2:0 | ||||
| 22. Round | 04/03/2017 | Zlaté Moravce | - | Spartak Trnava | 0:0 | ||||
| 23. Round | 12/03/2017 | FO ŽP Šport Podbrezová | - | Spartak Trnava | 0:1 | ||||
| 24. Round | 19/03/2017 | FC DAC 1904 | - | Spartak Trnava | 0:0 | ||||
| 30. Round | 07/05/2017 | AS Trenčín | - | Spartak Trnava | 3:4 |  |
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| 31. Round | 13/05/2017 | Spartak Trnava | - | MFK Zemplín Michalovce | 1:0 | ||||
| 32. Round | 19/05/2017 | FK Senica | - | Spartak Trnava | 1:0 |  |
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| 33. Round | 27/05/2017 | Spartak Trnava | - | Zlaté Moravce | 3:1 |
Slovakia