| 1. Round | 22/08/2009 | Ergotelis | - | Panathinaikos | 0:3 | ||||
| 2. Round | 30/08/2009 | Panathinaikos | - | Skoda Xanthi | 1:0 | ||||
| 3. Round | 13/09/2009 | Panthrakikos | - | Panathinaikos | 0:1 | ||||
| 4. Round | 20/09/2009 | Panathinaikos | - | Aris Saloniki | 2:1 | ||||
| 5. Round | 27/09/2009 | AEK Athen | - | Panathinaikos | 0:1 | ||||
| 6. Round | 05/10/2009 | Panathinaikos | - | AE Lárissa | 4:0 | ||||
| 7. Round | 18/10/2009 | AO Kavala | - | Panathinaikos | 2:2 | ||||
| 8. Round | 25/10/2009 | Panathinaikos | - | PAOK Saloniki | 2:1 | ||||
| 9. Round | 01/11/2009 | Panathinaikos | - | Panionios GSS | 2:1 |  |
|||
| 14. Round | 12/12/2009 | Iraklis Saloniki | - | Panathinaikos | 0:1 | ||||
| 16. Round | 06/01/2010 | Panathinaikos | - | Ergotelis | 4:1 | ||||
| 17. Round | 09/01/2010 | Skoda Xanthi | - | Panathinaikos | 1:2 | ||||
| 25. Round | 07/03/2010 | Panathinaikos | - | Levadiakos | 3:0 | ||||
| 26. Round | 14/03/2010 | Asteras Tripolis | - | Panathinaikos | 0:1 | ||||
| 28. Round | 28/03/2010 | Atromitos | - | Panathinaikos | 0:3 | ||||
| 29. Round | 11/04/2010 | Panathinaikos | - | Iraklis Saloniki | 2:0 | ||||
| 30. Round | 18/04/2010 | PAS Giannina | - | Panathinaikos | 0:1 |
Sweden