| 2. Round | 04/08/2013 | Atlético Junior | - | Once Caldas | 1:0 | ||||
| 3. Round | 11/08/2013 | Boyacá Chicó | - | Atlético Junior | 1:1 |  |
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| 4. Round | 18/08/2013 | Atlético Junior | - | Deportivo Pasto | 0:1 | ||||
| 5. Round | 22/08/2013 | Cúcuta Deportivo | - | Atlético Junior | 1:5 |  |
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| 6. Round | 25/08/2013 | Atlético Junior | - | Atlético Huila | 2:1 | ||||
| 8. Round | 01/09/2013 | Atlético Junior | - | Atlético Nacional | 0:1 | ||||
| 9. Round | 14/09/2013 | Atlético Junior | - | Cúcuta Deportivo | 1:1 | ||||
| 10. Round | 20/09/2013 | Itagüi Ditaires | - | Atlético Junior | 4:0 | ||||
| 11. Round | 26/09/2013 | Atlético Junior | - | Deportes Quindío | 3:0 | |
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| 15. Round | 19/10/2013 | Deportes Tolima | - | Atlético Junior | 3:3 | ||||
| 16. Round | 27/10/2013 | Atlético Junior | - | Millonarios | 3:2 | |
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| 17. Round | 03/11/2013 | La Equidad | - | Atlético Junior | 2:2 | ||||
| 18. Round | 10/11/2013 | Atlético Junior | - | Independiente Medellín | 3:2 | |
Colombia