| 20. Round | 18/02/2017 | FK Senica | - | MŠK Žilina | 2:0 |  |
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| 21. Round | 25/02/2017 | Spartak Trnava | - | FK Senica | 0:1 | ||||
| 23. Round | 11/03/2017 | FK Senica | - | Slovan Bratislava | 0:1 | ||||
| 24. Round | 19/03/2017 | AS Trenčín | - | FK Senica | 1:1 | ||||
| 25. Round | 01/04/2017 | FK Senica | - | MFK Zemplín Michalovce | 1:0 | ||||
| 26. Round | 07/04/2017 | 1. FC Tatran Prešov | - | FK Senica | 1:0 | ||||
| 27. Round | 15/04/2017 | Zlaté Moravce | - | FK Senica | 2:1 | ||||
| 28. Round | 23/04/2017 | FK Senica | - | FO ŽP Šport Podbrezová | 1:1 |  |
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| 29. Round | 27/04/2017 | FC DAC 1904 | - | FK Senica | 1:0 | ||||
| 30. Round | 06/05/2017 | FK Senica | - | MFK Ružomberok | 1:2 | ||||
| 31. Round | 13/05/2017 | MŠK Žilina | - | FK Senica | 3:2 | ||||
| 32. Round | 19/05/2017 | FK Senica | - | Spartak Trnava | 1:0 |
Slovakia