| 2. Round | 24/07/2016 | NK Krško | - | NK Domžale | 1:1 | ||||
| 3. Round | 01/08/2016 | Olimpija Ljubljana | - | NK Krško | 3:1 | ||||
| 4. Round | 06/08/2016 | NK Krško | - | ND Gorica | 1:0 |  |
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| 5. Round | 14/08/2016 | NK Aluminij | - | NK Krško | 3:0 | ||||
| 6. Round | 21/08/2016 | NK Krško | - | NK Celje | 1:0 | ||||
| 7. Round | 26/08/2016 | NK Radomlje | - | NK Krško | 2:2 | ||||
| 9. Round | 17/09/2016 | NK Krško | - | NK Maribor | 1:2 | ||||
| 11. Round | 24/09/2016 | NK Domžale | - | NK Krško | 5:0 | ||||
| 14. Round | 22/10/2016 | NK Krško | - | NK Aluminij | 2:2 | |
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| 16. Round | 06/11/2016 | NK Krško | - | NK Radomlje | 1:1 | ||||
| 18. Round | 26/11/2016 | NK Maribor | - | NK Krško | 4:0 | ||||
| 24. Round | 12/03/2017 | NK Krško | - | NK Celje | 2:3 |
Slovenia