| 2. Round | 30/07/2016 | FC Saxan | - | FC Academia UTM | 1:0 |  |
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| 3. Round | 06/08/2016 | FC Academia UTM | - | FC Zimbru | 0:2 | |
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| 4. Round | 13/08/2016 | Dacia Chişinău | - | FC Academia UTM | 2:0 | ||||
| 5. Round | 20/08/2016 | FC Academia UTM | - | FC Milsami | 0:4 | ||||
| 7. Round | 11/09/2016 | Speranţa Nisporeni | - | FC Academia UTM | 0:1 | ||||
| 8. Round | 17/09/2016 | FC Academia UTM | - | FC Sheriff | 0:1 | ||||
| 9. Round | 25/09/2016 | CS Petrocub | - | FC Academia UTM | 0:1 | ||||
| 10. Round | 30/09/2016 | FC Academia UTM | - | FC Zaria | 0:2 | ||||
| 11. Round | 15/10/2016 | Dinamo-Auto | - | FC Academia UTM | 3:1 | ||||
| 20. Round | 24/02/2017 | FC Academia UTM | - | CS Petrocub | 2:1 | ||||
| 21. Round | 28/02/2017 | FC Zaria | - | FC Academia UTM | 6:0 |
Moldova