| 1. Round | 06/08/2016 | Portsmouth FC | - | Carlisle United | 1:1 | ||||
| 2. Round | 13/08/2016 | Crewe Alexandra | - | Portsmouth FC | 0:0 | ||||
| 3. Round | 16/08/2016 | Morecambe FC | - | Portsmouth FC | 2:0 | ||||
| 5. Round | 27/08/2016 | Exeter City | - | Portsmouth FC | 0:1 | ||||
| 6. Round | 03/09/2016 | Portsmouth FC | - | Crawley Town | 3:0 | ||||
| 7. Round | 10/09/2016 | Portsmouth FC | - | Wycombe Wanderers | 4:2 | ||||
| 8. Round | 17/09/2016 | Accrington Stanley | - | Portsmouth FC | 1:0 | ||||
| 9. Round | 24/09/2016 | Portsmouth FC | - | Barnet FC | 5:1 |  |
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| 11. Round | 01/10/2016 | Portsmouth FC | - | Doncaster Rovers | 1:2 | ||||
| 12. Round | 08/10/2016 | Leyton Orient | - | Portsmouth FC | 0:1 | ||||
| 13. Round | 15/10/2016 | Plymouth Argyle | - | Portsmouth FC | 2:2 | ||||
| 14. Round | 22/10/2016 | Portsmouth FC | - | Notts County | 1:2 | ||||
| 25. Round | 05/01/2017 | Doncaster Rovers | - | Portsmouth FC | 3:1 |
Slovakia