| 2. Round | 02/08/2003 | 1. FC Brno | - | 1. FC Synot Stare Mesto | 3:1 | ||||
| 5. Round | 25/08/2003 | Slovan Liberec | - | 1. FC Brno | 0:0 |  |
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| 6. Round | 30/08/2003 | 1. FC Brno | - | Chmel Blsany | 1:1 | |
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| 7. Round | 13/09/2003 | Viktoria Plzeň | - | 1. FC Brno | 1:1 | ||||
| 11. Round | 20/10/2003 | 1. FC Brno | - | FK Teplice | 2:1 | ||||
| 12. Round | 27/10/2003 | AC Sparta Praha | - | 1. FC Brno | 1:0 | |
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| 13. Round | 01/11/2003 | 1. FC Brno | - | FK Jablonec 97 | 1:1 | ||||
| 14. Round | 08/11/2003 | Sigma Olomouc | - | 1. FC Brno | 3:1 | |
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| 16. Round | 29/11/2003 | SFC Opava | - | 1. FC Brno | 4:0 |
Slovakia