| 1. Round | 24/07/2009 | NK Inter Zaprešić | - | NK Varteks | 1:1 | ||||
| 2. Round | 31/07/2009 | NK Zagreb | - | NK Inter Zaprešić | 0:3 | ||||
| 3. Round | 07/08/2009 | NK Inter Zaprešić | - | HNK Cibalia | 1:0 | ||||
| 4. Round | 15/08/2009 | Hajduk Split | - | NK Inter Zaprešić | 2:2 | ||||
| 5. Round | 21/08/2009 | NK Inter Zaprešić | - | HNK Šibenik | 0:1 | ||||
| 11. Round | 16/10/2009 | NK Inter Zaprešić | - | NK Zadar | 4:3 | ||||
| 12. Round | 23/10/2009 | Slaven Belupo | - | NK Inter Zaprešić | 5:2 | ||||
| 13. Round | 30/10/2009 | NK Inter Zaprešić | - | NK Istra 1961 | 1:0 | ||||
| 14. Round | 07/11/2009 | NK Inter Zaprešić | - | HNK Rijeka | 3:0 | ||||
| 16. Round | 28/11/2009 | NK Varteks | - | NK Inter Zaprešić | 2:1 |
Croatia