| 3. Round | 12/09/1998 | OFI Heraklion | - | Skoda Xanthi | 4:2 | ||||
| 4. Round | 19/09/1998 | Skoda Xanthi | - | Paniliakos Pyrgos | 2:1 | ||||
| 5. Round | 26/09/1998 | AO Proodeftiki | - | Skoda Xanthi | 1:2 | ||||
| 6. Round | 03/10/1998 | Ethnikos Asteras | - | Skoda Xanthi | 0:1 | ||||
| 7. Round | 24/10/1998 | Skoda Xanthi | - | PAOK Saloniki | 0:1 | ||||
| 8. Round | 31/10/1998 | Ionikos Nikea | - | Skoda Xanthi | 0:1 | ||||
| 9. Round | 07/11/1998 | Skoda Xanthi | - | Aris Saloniki | 2:0 | ||||
| 11. Round | 28/11/1998 | Skoda Xanthi | - | Panathinaikos | 1:0 | ||||
| 12. Round | 05/12/1998 | Ethnikos Piraeus | - | Skoda Xanthi | 1:1 |
Morocco