| 6. Round | 18/08/2012 | MŠK Žilina | - | MFK Ružomberok | 0:0 | ||||
| 2. Round | 21/08/2012 | MŠK Žilina | - | Spartak Trnava | 1:1 | ||||
| 7. Round | 25/08/2012 | Zlaté Moravce | - | MŠK Žilina | 1:0 | ||||
| 8. Round | 01/09/2012 | MŠK Žilina | - | FC Nitra | 1:1 | ||||
| 9. Round | 16/09/2012 | FK Dukla Banská Bystrica | - | MŠK Žilina | 2:2 |  |
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| 10. Round | 22/09/2012 | MŠK Žilina | - | 1. FC Tatran Prešov | 3:0 |  |
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| 11. Round | 29/09/2012 | MFK Košice | - | MŠK Žilina | 1:1 | |
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| 12. Round | 06/10/2012 | Spartak Myjava | - | MŠK Žilina | 1:1 | ||||
| 13. Round | 20/10/2012 | Spartak Trnava | - | MŠK Žilina | 1:2 | |
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| 15. Round | 03/11/2012 | FK Senica | - | MŠK Žilina | 0:0 | ||||
| 16. Round | 11/11/2012 | MŠK Žilina | - | AS Trenčín | 0:0 | |
Gambia