| 7. Round | 13/09/2016 | Norwich City | - | Wigan Athletic | 2:1 | ||||
| 8. Round | 17/09/2016 | Wigan Athletic | - | Fulham FC | 0:0 | ||||
| 9. Round | 23/09/2016 | Preston North End | - | Wigan Athletic | 1:0 | ||||
| 10. Round | 27/09/2016 | Wigan Athletic | - | Wolverhampton Wanderers | 2:1 | ||||
| 11. Round | 01/10/2016 | Brentford FC | - | Wigan Athletic | 0:0 | ||||
| 12. Round | 15/10/2016 | Wigan Athletic | - | Burton Albion | 0:0 | ||||
| 13. Round | 18/10/2016 | Leeds United | - | Wigan Athletic | 1:1 | ||||
| 14. Round | 22/10/2016 | Wigan Athletic | - | Brighton & Hove Albion | 0:1 | ||||
| 15. Round | 29/10/2016 | Cardiff City | - | Wigan Athletic | 0:1 | ||||
| 16. Round | 05/11/2016 | Wigan Athletic | - | Reading FC | 0:3 | ||||
| 18. Round | 28/11/2016 | Huddersfield Town | - | Wigan Athletic | 1:2 | ||||
| 22. Round | 17/12/2016 | Wigan Athletic | - | Ipswich Town | 2:3 | ||||
| 23. Round | 26/12/2016 | Rotherham United | - | Wigan Athletic | 3:2 | ||||
| 24. Round | 31/12/2016 | Derby County | - | Wigan Athletic | 0:0 |
England