| 2. Round | 16/07/2016 | FK Khimki | - | FK Tambov | 0:0 | ||||
| 3. Round | 23/07/2016 | SKA-Khabarovsk | - | FK Khimki | 1:1 | ||||
| 5. Round | 31/07/2016 | FK Khimki | - | Sibir Novosibirsk | 1:1 | ||||
| 6. Round | 06/08/2016 | Mordovia Saransk | - | FK Khimki | 5:0 | ||||
| 9. Round | 21/08/2016 | FK Khimki | - | Sokol Saratov | 0:0 | ||||
| 10. Round | 28/08/2016 | Shinnik Yaroslavl | - | FK Khimki | 2:0 | ||||
| 11. Round | 02/09/2016 | FK Khimki | - | FK Tyumen | 3:2 |  |
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| 12. Round | 10/09/2016 | Enisey Krasnoyarsk | - | FK Khimki | 3:0 | ||||
| 26. Round | 12/03/2017 | FK Khimki | - | Fakel Voronezh | 0:0 |
Russia