| 17. Round | 24/02/2007 | FC Carl Zeiss Jena II | - | VfB Auerbach | 0:1 | ||||
| 20. Round | 17/03/2007 | FC Carl Zeiss Jena II | - | FSV Zwickau | 2:1 |  |
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| 21. Round | 24/03/2007 | FC Carl Zeiss Jena II | - | Sachsen Leipzig | 0:0 | ||||
| 25. Round | 28/04/2007 | FC Carl Zeiss Jena II | - | FV Dresden-Nord | 1:1 | ||||
| 26. Round | 06/05/2007 | Germania Halberstadt | - | FC Carl Zeiss Jena II | 2:1 |  |
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| 28. Round | 16/05/2007 | FC Carl Zeiss Jena II | - | Rot-Weiß Erfurt II | 2:2 | ||||
| 29. Round | 20/05/2007 | Energie Cottbus II | - | FC Carl Zeiss Jena II | 3:2 | ||||
| 30. Round | 27/05/2007 | FC Carl Zeiss Jena II | - | ZFC Meuselwitz | 2:2 | |
Kosovo
Albania