| A Lyga | 08/11/15 | FC Stumbras | - | FK Atlantas | 0:2 | ||||
| A Lyga | 28/11/15 | FK Atlantas | - | FK Sūduva | 2:1 | ||||
| A Lyga | 05/03/16 | FK Atlantas | - | FC Stumbras | 2:0 | ||||
| A Lyga | 27/04/16 | FK Atlantas | - | FK Sūduva | 1:2 | ||||
| A Lyga | 05/05/16 | Utenis Utena | - | FK Atlantas | 0:2 | ||||
| A Lyga | 17/05/16 | Kauno Žalgiris | - | FK Atlantas | 0:2 | ||||
| A Lyga | 19/07/16 | FK Jonava | - | FK Atlantas | 1:2 | ||||
| A Lyga | 20/11/16 | FK Sūduva | - | FK Atlantas | 3:1 | ||||
| A Lyga | 12/04/17 | FK Jonava | - | FK Atlantas | 0:2 |  |
Russia