| 6. Round | 05/09/2009 | Gillingham FC | - | Exeter City | 3:0 | ||||
| 7. Round | 12/09/2009 | Leyton Orient | - | Exeter City | 1:1 | ||||
| 8. Round | 19/09/2009 | Exeter City | - | Tranmere Rovers | 2:1 | ||||
| 9. Round | 26/09/2009 | Charlton Athletic | - | Exeter City | 2:1 | ||||
| 10. Round | 29/09/2009 | Exeter City | - | Swindon Town | 1:1 | ||||
| 11. Round | 03/10/2009 | Exeter City | - | Hartlepool United | 3:1 | ||||
| 12. Round | 10/10/2009 | Huddersfield Town | - | Exeter City | 4:0 |
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