| 1. Round | 30/08/2008 | OFI Heraklion | - | PAOK Saloniki | 0:2 | ||||
| 3. Round | 20/09/2008 | Panthrakikos | - | PAOK Saloniki | 0:1 | ||||
| 4. Round | 28/09/2008 | PAOK Saloniki | - | Aris Saloniki | 1:0 | ||||
| 5. Round | 04/10/2008 | Ergotelis | - | PAOK Saloniki | 0:0 | ||||
| 6. Round | 19/10/2008 | PAOK Saloniki | - | Panathinaikos | 0:0 | ||||
| 9. Round | 08/11/2008 | PAOK Saloniki | - | Panionios GSS | 2:0 | ||||
| 10. Round | 16/11/2008 | Olympiakos Piraeus | - | PAOK Saloniki | 2:0 |  |
|||
| 12. Round | 29/11/2008 | Thrasyvoulos Fylis | - | PAOK Saloniki | 1:2 | |
|||
| 17. Round | 11/01/2009 | AEK Athen | - | PAOK Saloniki | 1:0 | ||||
| 18. Round | 18/01/2009 | PAOK Saloniki | - | Panthrakikos | 2:0 | ||||
| 19. Round | 25/01/2009 | Aris Saloniki | - | PAOK Saloniki | 0:0 | ||||
| 20. Round | 01/02/2009 | PAOK Saloniki | - | Ergotelis | 2:0 | ||||
| 21. Round | 08/02/2009 | Panathinaikos | - | PAOK Saloniki | 3:0 |  |
|||
| 22. Round | 14/02/2009 | Levadiakos | - | PAOK Saloniki | 0:3 | ||||
| 23. Round | 21/02/2009 | PAOK Saloniki | - | Iraklis Saloniki | 1:0 | ||||
| 28. Round | 05/04/2009 | Asteras Tripolis | - | PAOK Saloniki | 0:2 | ||||
| 29. Round | 12/04/2009 | Skoda Xanthi | - | PAOK Saloniki | 1:2 | ||||
| 30. Round | 26/04/2009 | PAOK Saloniki | - | Panserraikos | 4:1 |
Uruguay
Spain