| 1. Round | 07/07/2019 | FK Nizhny Novgorod | - | FK Tom Tomsk | 0:2 | ||||
| 2. Round | 13/07/2019 | FK Tom Tomsk | - | FK Torpedo Armavir | 2:0 |  |
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| 3. Round | 20/07/2019 | Luch Vladivostok | - | FK Tom Tomsk | 1:1 | ||||
| 4. Round | 24/07/2019 | FK Tom Tomsk | - | Avangard Kursk | 2:0 | ||||
| 5. Round | 28/07/2019 | FK Tom Tomsk | - | Tekstilshchik Ivanovo | 2:1 | |
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| 6. Round | 03/08/2019 | FK Tom Tomsk | - | Enisey Krasnoyarsk | 0:0 | ||||
| 7. Round | 10/08/2019 | FK Tom Tomsk | - | Rotor Volgograd | 0:1 | ||||
| 8. Round | 14/08/2019 | FK Tom Tomsk | - | FK Khimki | 0:0 |  |
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| 9. Round | 18/08/2019 | FK Krasnodar 2 | - | FK Tom Tomsk | 0:1 | ||||
| 10. Round | 25/08/2019 | FK Chertanovo | - | FK Tom Tomsk | 1:1 | ||||
| 11. Round | 31/08/2019 | FK Tom Tomsk | - | FK Neftekhimik | 0:1 | ||||
| 12. Round | 07/09/2019 | Shinnik Yaroslavl | - | FK Tom Tomsk | 2:1 | ||||
| 13. Round | 14/09/2019 | FK Tom Tomsk | - | Spartak Moskva 2 | 2:2 | |
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| 14. Round | 21/09/2019 | Torpedo Moskva | - | FK Tom Tomsk | 2:1 | ||||
| 15. Round | 29/09/2019 | FK Tom Tomsk | - | FK Chayka | 3:1 | ||||
| 26. Round | 09/03/2020 | FK Khimki | - | FK Tom Tomsk | 3:0 | ||||
| 27. Round | 15/03/2020 | FK Tom Tomsk | - | FK Krasnodar 2 | 2:1 |
Russia