| 1. Round | 17/01/2009 | Jaguares Chiapas | - | Atlas Guadalajara | 2:1 | ||||
| 2. Round | 24/01/2009 | Cruz Azul | - | Atlas Guadalajara | 4:0 | ||||
| 3. Round | 01/02/2009 | Atlas Guadalajara | - | UANL Tigres | 1:1 | ||||
| 4. Round | 07/02/2009 | Club San Luis | - | Atlas Guadalajara | 2:1 | ||||
| 5. Round | 15/02/2009 | Atlas Guadalajara | - | Atlante | 1:0 | ||||
| 11. Round | 22/03/2009 | Atlas Guadalajara | - | UAG Tecos | 0:0 | ||||
| 12. Round | 05/04/2009 | CF Monterrey | - | Atlas Guadalajara | 2:2 | ||||
| 13. Round | 12/04/2009 | Atlas Guadalajara | - | Club Necaxa | 4:1 | ||||
| 14. Round | 19/04/2009 | Santos Laguna | - | Atlas Guadalajara | 4:1 |
Mexico