| 1. Round | 04/03/2017 | Pärnu JK Vaprus | - | JK Nõmme Kalju | 2:6 |  |
|||
| 2. Round | 10/03/2017 | JK Nõmme Kalju | - | FC Flora | 1:1 | ||||
| 3. Round | 18/03/2017 | JK Nõmme Kalju | - | JK Sillamäe Kalev | 2:1 | |
|||
| 4. Round | 01/04/2017 | JK Nõmme Kalju | - | Paide Linnameeskond | 1:0 | ||||
| 5. Round | 07/04/2017 | JK Nõmme Kalju | - | FC Infonet | 3:2 | ||||
| 6. Round | 15/04/2017 | JK Narva Trans | - | JK Nõmme Kalju | 1:0 | ||||
| 7. Round | 22/04/2017 | JK Nõmme Kalju | - | Tulevik Viljandi | 8:0 | |
|||
| 8. Round | 25/04/2017 | FC Levadia | - | JK Nõmme Kalju | 1:1 | ||||
| 9. Round | 28/04/2017 | JK Tammeka | - | JK Nõmme Kalju | 1:3 | ||||
| 14. Round | 30/05/2017 | FC Infonet | - | JK Nõmme Kalju | 2:2 | ||||
| 15. Round | 03/06/2017 | Paide Linnameeskond | - | JK Nõmme Kalju | 0:1 | ||||
| 17. Round | 19/06/2017 | FC Flora | - | JK Nõmme Kalju | 2:0 | ||||
| 18. Round | 09/07/2017 | JK Nõmme Kalju | - | Pärnu JK Vaprus | 3:0 | ||||
| 20. Round | 23/07/2017 | JK Nõmme Kalju | - | Tulevik Viljandi | 5:1 | |
|||
| 29. Round | 12/09/2017 | FC Flora | - | JK Nõmme Kalju | 0:4 | ||||
| 30. Round | 16/09/2017 | JK Sillamäe Kalev | - | JK Nõmme Kalju | 0:0 | ||||
| 32. Round | 29/09/2017 | JK Tammeka | - | JK Nõmme Kalju | 0:3 | |
Estonia