| 3. Round | 21/09/2008 | AEK Athen | - | Iraklis Saloniki | 1:0 | ||||
| 4. Round | 28/09/2008 | Panionios GSS | - | AEK Athen | 2:2 | ||||
| 17. Round | 11/01/2009 | AEK Athen | - | PAOK Saloniki | 1:0 | ||||
| 22. Round | 14/02/2009 | AEK Athen | - | Thrasyvoulos Fylis | 1:0 |  |
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| 23. Round | 22/02/2009 | Asteras Tripolis | - | AEK Athen | 0:1 | |
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| 24. Round | 28/02/2009 | AEK Athen | - | Skoda Xanthi | 2:1 | |
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| 25. Round | 08/03/2009 | Panserraikos | - | AEK Athen | 1:5 | ||||
| 28. Round | 05/04/2009 | Panthrakikos | - | AEK Athen | 1:1 | ||||
| 30. Round | 26/04/2009 | Ergotelis | - | AEK Athen | 1:1 | |
Kosovo