| 5. Round | 11/08/2012 | FC Nitra | - | FK Dukla Banská Bystrica | 1:1 | ||||
| 6. Round | 18/08/2012 | Spartak Myjava | - | FK Dukla Banská Bystrica | 0:1 |  |
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| 8. Round | 01/09/2012 | MFK Košice | - | FK Dukla Banská Bystrica | 1:0 | |
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| 12. Round | 06/10/2012 | FK Dukla Banská Bystrica | - | FK Senica | 1:2 | ||||
| 13. Round | 20/10/2012 | AS Trenčín | - | FK Dukla Banská Bystrica | 1:1 | ||||
| 15. Round | 03/11/2012 | Zlaté Moravce | - | FK Dukla Banská Bystrica | 2:0 | ||||
| 16. Round | 10/11/2012 | FK Dukla Banská Bystrica | - | FC Nitra | 2:0 | ||||
| 18. Round | 24/11/2012 | 1. FC Tatran Prešov | - | FK Dukla Banská Bystrica | 1:0 | ||||
| 19. Round | 01/12/2012 | FK Dukla Banská Bystrica | - | MFK Košice | 1:2 |
Slovakia