| 3. Round | 01/08/2016 | Olimpija Ljubljana | - | NK Krško | 3:1 | ||||
| 4. Round | 06/08/2016 | NK Krško | - | ND Gorica | 1:0 | ||||
| 5. Round | 14/08/2016 | NK Aluminij | - | NK Krško | 3:0 | ||||
| 7. Round | 26/08/2016 | NK Radomlje | - | NK Krško | 2:2 |  |
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| 9. Round | 17/09/2016 | NK Krško | - | NK Maribor | 1:2 | ||||
| 13. Round | 14/10/2016 | ND Gorica | - | NK Krško | 1:1 | ||||
| 14. Round | 22/10/2016 | NK Krško | - | NK Aluminij | 2:2 | ||||
| 15. Round | 29/10/2016 | NK Celje | - | NK Krško | 0:3 |
Slovenia