| 2. Round | 14/04/2024 | FK Orel | - | FK Khimki 2 | 1:2 |  |
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| 3. Round | 21/04/2024 | FK Khimki 2 | - | SKA-Khabarovsk 2 | 1:0 | |
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| 9. Round | 01/06/2024 | Spartak Tambov | - | FK Khimki 2 | 2:3 | ||||
| 10. Round | 07/06/2024 | FK Khimki 2 | - | Zenit Penza | 2:0 | ||||
| 12. Round | 19/06/2024 | FK Sakhalin | - | FK Khimki 2 | 2:0 | ||||
| 17. Round | 04/08/2024 | SKA-Khabarovsk 2 | - | FK Khimki 2 | 0:5 | |
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| 20. Round | 24/08/2024 | FK Khimki 2 | - | Dinamo Vladivostok | 0:2 | |
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| 23. Round | 15/09/2024 | FK Khimki 2 | - | Spartak Tambov | 0:3 | ||||
| 24. Round | 22/09/2024 | Zenit Penza | - | FK Khimki 2 | 3:2 | ||||
| 25. Round | 29/09/2024 | FK Khimki 2 | - | Arsenal Tula 2 | 2:2 | ||||
| 26. Round | 06/10/2024 | FK Khimki 2 | - | FK Sakhalin | 1:0 | |
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| 27. Round | 13/10/2024 | FK Khimki 2 | - | FK Kolomna | 3:1 | |
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| 28. Round | 20/10/2024 | Kosmos Dolgoprudny | - | FK Khimki 2 | 1:1 | ||||
| 29. Round | 28/10/2024 | FK Khimki 2 | - | FK Ryazan | 0:2 | ||||
| 30. Round | 03/11/2024 | Salyut Belgorod | - | FK Khimki 2 | 1:2 |
Russia