| 4. Round | 19/08/2016 | Havre AC | - | ESTAC Troyes | 1:3 | ||||
| 5. Round | 27/08/2016 | Red Star FC | - | Havre AC | 0:0 | ||||
| 6. Round | 10/09/2016 | Havre AC | - | Valenciennes FC | 2:2 | ||||
| 7. Round | 16/09/2016 | FC Bourg-Péronnas | - | Havre AC | 2:1 | ||||
| 8. Round | 20/09/2016 | Havre AC | - | Stade Brestois 29 | 1:1 | ||||
| 11. Round | 14/10/2016 | Clermont Foot 63 | - | Havre AC | 1:3 | ||||
| 12. Round | 21/10/2016 | Havre AC | - | AC Ajaccio | 2:0 | ||||
| 18. Round | 09/12/2016 | Chamois Niortais | - | Havre AC | 1:1 |  |
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| 19. Round | 16/12/2016 | Havre AC | - | Tours FC | 0:2 | ||||
| 20. Round | 13/01/2017 | Nîmes Olympique | - | Havre AC | 0:0 | ||||
| 21. Round | 20/01/2017 | Havre AC | - | Gazélec FC Ajaccio | 1:2 | ||||
| 22. Round | 27/01/2017 | ESTAC Troyes | - | Havre AC | 2:1 | ||||
| 23. Round | 03/02/2017 | Havre AC | - | Red Star FC | 1:1 | ||||
| 38. Round | 19/05/2017 | Havre AC | - | US Orléans | 4:1 | |
France