| 1. Round | 21/07/2006 | Dinamo Kiev | - | Chernomorets Odessa | 4:1 | ||||
| 2. Round | 29/07/2006 | Arsenal Kiev | - | Chernomorets Odessa | 1:1 | ||||
| 9. Round | 02/10/2006 | Chernomorets Odessa | - | Vorskla Poltava | 2:0 | ||||
| 10. Round | 15/10/2006 | Tavriya Simferopol (1958-2014) | - | Chernomorets Odessa | 1:1 | ||||
| 11. Round | 22/10/2006 | Chernomorets Odessa | - | Dnipro Dnipropetrovsk | 0:1 | ||||
| 12. Round | 29/10/2006 | Stal Alchevsk | - | Chernomorets Odessa | 2:1 | ||||
| 13. Round | 05/11/2006 | Chernomorets Odessa | - | FK Kharkiv | 4:2 | ||||
| 15. Round | 19/11/2006 | Chernomorets Odessa | - | Karpaty Lviv | 1:0 | ||||
| 16. Round | 26/11/2006 | Chernomorets Odessa | - | Dinamo Kiev | 2:3 | ||||
| 17. Round | 04/03/2007 | Chernomorets Odessa | - | Arsenal Kiev | 2:0 | ||||
| 19. Round | 18/03/2007 | Chernomorets Odessa | - | FK Krivbas (old) | 2:3 | ||||
| 20. Round | 01/04/2007 | Zorya Lugansk | - | Chernomorets Odessa | 0:4 |  |
Russia