| 4. Round | 03/04/2004 | FK Saturn | - | Dinamo Moskva | 0:0 | ||||
| 5. Round | 07/04/2004 | Alania Vladikavkaz | - | FK Saturn | 0:3 |  |
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| 6. Round | 10/04/2004 | FK Saturn | - | Lokomotiv Moskva | 1:2 | ||||
| 7. Round | 17/04/2004 | Kuban Krasnodar (1928-2018) | - | FK Saturn | 0:0 | ||||
| 8. Round | 25/04/2004 | FK Saturn | - | FK Rostov | 2:0 | ||||
| 9. Round | 02/05/2004 | FK Saturn | - | Torpedo Metallurg Moskva | 1:1 | ||||
| 10. Round | 09/05/2004 | CSKA Moskva | - | FK Saturn | 2:0 | ||||
| 12. Round | 19/05/2004 | FK Saturn | - | Rubin Kazan | 1:1 | ||||
| 13. Round | 23/05/2004 | Shinnik Yaroslavl | - | FK Saturn | 1:0 | ||||
| 14. Round | 03/07/2004 | FK Saturn | - | FK Amkar Perm | 1:1 | ||||
| 15. Round | 07/07/2004 | Torpedo Moskva | - | FK Saturn | 1:2 | ||||
| 22. Round | 11/09/2004 | Rotor Volgograd (1929-2005) | - | FK Saturn | 1:0 | ||||
| 24. Round | 26/09/2004 | FK Saturn | - | Kuban Krasnodar (1928-2018) | 2:1 | ||||
| 25. Round | 03/10/2004 | Lokomotiv Moskva | - | FK Saturn | 2:0 | ||||
| 27. Round | 24/10/2004 | Dinamo Moskva | - | FK Saturn | 0:2 | ||||
| 28. Round | 31/10/2004 | FK Saturn | - | Zenit St. Petersburg | 1:3 | |
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| 30. Round | 12/11/2004 | FK Saturn | - | Krylia Sovetov | 1:2 |
Moldova