| 4. Round | 15/09/2013 | Platanias Chanion | - | Panathinaikos | 1:1 | ||||
| 5. Round | 21/09/2013 | Panathinaikos | - | OFI Heraklion | 1:0 |  |
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| 6. Round | 29/09/2013 | Panathinaikos | - | Asteras Tripolis | 2:1 | ||||
| 7. Round | 06/10/2013 | PAOK Saloniki | - | Panathinaikos | 2:1 |  |
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| 9. Round | 26/10/2013 | Ergotelis | - | Panathinaikos | 0:2 | ||||
| 10. Round | 02/11/2013 | Panathinaikos | - | Olympiakos Piraeus | 0:1 | ||||
| 16. Round | 18/12/2013 | Levadiakos | - | Panathinaikos | 0:4 | |
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| 17. Round | 22/12/2013 | Panathinaikos | - | Skoda Xanthi | 2:1 | |
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| 19. Round | 11/01/2014 | Panathinaikos | - | Panionios GSS | 1:0 | ||||
| 20. Round | 19/01/2014 | Veria FC | - | Panathinaikos | 1:3 | ||||
| 21. Round | 25/01/2014 | Panathinaikos | - | Platanias Chanion | 1:0 | ||||
| 22. Round | 01/02/2014 | OFI Heraklion | - | Panathinaikos | 1:1 |  |
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| 26. Round | 23/02/2014 | Panathinaikos | - | Ergotelis | 1:1 | |
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| 31. Round | 26/03/2014 | Panathinaikos | - | AEL Kalloni | 3:0 | ||||
| 34. Round | 13/04/2014 | Skoda Xanthi | - | Panathinaikos | 3:1 |
Greece