| 5. Round | 31/03/2012 | JK Nõmme Kalju | - | FC Viljandi | 4:0 |  |
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| 6. Round | 07/04/2012 | JK Nõmme Kalju | - | JK Narva Trans | 4:1 | |
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| 10. Round | 28/04/2012 | JK Nõmme Kalju | - | JK Tammeka | 3:0 | |
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| 12. Round | 12/05/2012 | JK Nõmme Kalju | - | JK Sillamäe Kalev | 5:0 | |
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| 14. Round | 22/05/2012 | FC Viljandi | - | JK Nõmme Kalju | 0:3 | |
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| 16. Round | 16/06/2012 | JK Tallinna Kalev | - | JK Nõmme Kalju | 0:5 | |
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| 26. Round | 28/08/2012 | FC Kuressaare | - | JK Nõmme Kalju | 0:9 | |
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| 25. Round | 04/09/2012 | JK Nõmme Kalju | - | JK Tallinna Kalev | 7:0 | |
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| 29. Round | 18/09/2012 | JK Nõmme Kalju | - | FC Kuressaare | 6:1 | |
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| 31. Round | 29/09/2012 | JK Nõmme Kalju | - | Paide Linnameeskond | 1:1 | |
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| 32. Round | 02/10/2012 | FC Viljandi | - | JK Nõmme Kalju | 1:9 | |
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| 33. Round | 06/10/2012 | JK Narva Trans | - | JK Nõmme Kalju | 0:2 | |
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| 34. Round | 20/10/2012 | JK Nõmme Kalju | - | JK Sillamäe Kalev | 2:2 | |
Estonia