| 22. Round | 11/04/1999 | FC Boby-sport Brno | - | Baník Ostrava | 3:0 | ||||
| 24. Round | 25/04/1999 | Viktoria Žižkov | - | FC Boby-sport Brno | 0:2 | ||||
| 25. Round | 02/05/1999 | FC Boby-sport Brno | - | FK Jablonec 97 | 3:0 |  |
|||
| 27. Round | 12/05/1999 | FC Boby-sport Brno | - | SK Hradec Králové | 0:1 | ||||
| 29. Round | 22/05/1999 | FC Boby-sport Brno | - | FC Karviná | 4:2 |
Czech Republic