| 12. Round | 06/10/2012 | Spartak Myjava | - | MŠK Žilina | 1:1 | ||||
| 13. Round | 20/10/2012 | Zlaté Moravce | - | Spartak Myjava | 3:1 | ||||
| 17. Round | 17/11/2012 | FK Dukla Banská Bystrica | - | Spartak Myjava | 1:1 | ||||
| 18. Round | 25/11/2012 | Spartak Myjava | - | FK Senica | 1:2 | ||||
| 20. Round | 02/03/2013 | Spartak Myjava | - | AS Trenčín | 0:1 |  |
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| 21. Round | 09/03/2013 | MFK Košice | - | Spartak Myjava | 1:2 | |
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| 22. Round | 16/03/2013 | Spartak Myjava | - | MFK Ružomberok | 1:0 | |
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| 25. Round | 06/04/2013 | Spartak Trnava | - | Spartak Myjava | 1:1 | ||||
| 26. Round | 14/04/2013 | Spartak Myjava | - | FC Nitra | 0:0 | ||||
| 28. Round | 27/04/2013 | Spartak Myjava | - | FK Dukla Banská Bystrica | 2:1 | ||||
| 29. Round | 04/05/2013 | FK Senica | - | Spartak Myjava | 0:3 | |
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| 30. Round | 11/05/2013 | Spartak Myjava | - | 1. FC Tatran Prešov | 2:0 | ||||
| 31. Round | 18/05/2013 | Spartak Myjava | - | AS Trenčín | 0:2 | |
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| 32. Round | 22/05/2013 | Spartak Myjava | - | MFK Košice | 1:0 | ||||
| 33. Round | 26/05/2013 | MFK Ružomberok | - | Spartak Myjava | 0:1 |
Slovakia