| 1. Round | 20/07/2012 | FC Blau Weiß Linz | - | TSV Hartberg | 2:2 | ||||
| 2. Round | 27/07/2012 | First Vienna FC | - | FC Blau Weiß Linz | 0:0 | ||||
| 3. Round | 03/08/2012 | FC Blau Weiß Linz | - | FC Lustenau | 0:1 | ||||
| 4. Round | 06/08/2012 | Kapfenberger SV 1919 | - | FC Blau Weiß Linz | 2:2 | ||||
| 5. Round | 10/08/2012 | FC Blau Weiß Linz | - | SCR Altach | 0:2 | ||||
| 6. Round | 17/08/2012 | SV Horn | - | FC Blau Weiß Linz | 1:1 | ||||
| 7. Round | 24/08/2012 | FC Blau Weiß Linz | - | Austria Lustenau | 2:4 | ||||
| 9. Round | 14/09/2012 | FC Blau Weiß Linz | - | SV Grödig | 1:3 | ||||
| 10. Round | 21/09/2012 | TSV Hartberg | - | FC Blau Weiß Linz | 1:3 | ||||
| 11. Round | 28/09/2012 | FC Blau Weiß Linz | - | First Vienna FC | 0:1 | ||||
| 12. Round | 05/10/2012 | FC Lustenau | - | FC Blau Weiß Linz | 4:0 | ||||
| 13. Round | 19/10/2012 | FC Blau Weiß Linz | - | Kapfenberger SV 1919 | 0:3 |  |
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| 14. Round | 26/10/2012 | SCR Altach | - | FC Blau Weiß Linz | 1:1 | ||||
| 15. Round | 02/11/2012 | FC Blau Weiß Linz | - | SV Horn | 3:0 | ||||
| 17. Round | 16/11/2012 | FC Blau Weiß Linz | - | SKN St. Pölten | 2:2 | ||||
| 19. Round | 30/11/2012 | FC Blau Weiß Linz | - | TSV Hartberg | 0:1 |
Austria