| 26. Round | 04/01/2003 | Colchester United | - | Tranmere Rovers | 2:2 | ||||
| 30. Round | 01/02/2003 | Tranmere Rovers | - | Port Vale FC | 1:0 | ||||
| 32. Round | 15/02/2003 | Plymouth Argyle | - | Tranmere Rovers | 0:1 | ||||
| 33. Round | 22/02/2003 | Tranmere Rovers | - | Blackpool FC | 2:1 | ||||
| 34. Round | 01/03/2003 | Brentford FC | - | Tranmere Rovers | 1:2 | ||||
| 35. Round | 04/03/2003 | Wigan Athletic | - | Tranmere Rovers | 0:0 | ||||
| 36. Round | 08/03/2003 | Tranmere Rovers | - | Crewe Alexandra | 2:1 | ||||
| 37. Round | 14/03/2003 | Tranmere Rovers | - | Cardiff City | 3:3 | ||||
| 38. Round | 18/03/2003 | Barnsley FC | - | Tranmere Rovers | 1:1 |  |
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| 39. Round | 22/03/2003 | Peterborough United | - | Tranmere Rovers | 0:0 | ||||
| 40. Round | 29/03/2003 | Tranmere Rovers | - | Chesterfield FC | 2:1 | ||||
| 41. Round | 05/04/2003 | Luton Town | - | Tranmere Rovers | 0:0 | ||||
| 42. Round | 12/04/2003 | Tranmere Rovers | - | Wycombe Wanderers | 1:0 | ||||
| 43. Round | 19/04/2003 | Notts County | - | Tranmere Rovers | 0:1 | ||||
| 44. Round | 21/04/2003 | Tranmere Rovers | - | Northampton Town | 4:0 | ||||
| 45. Round | 29/04/2003 | Tranmere Rovers | - | Mansfield Town | 3:1 | ||||
| 46. Round | 03/05/2003 | Stockport County | - | Tranmere Rovers | 2:3 | |
Netherlands