| 1. Round | 24/07/2016 | FC Academia UTM | - | CF Ungheni | 4:1 | ||||
| 2. Round | 30/07/2016 | FC Saxan | - | FC Academia UTM | 1:0 | ||||
| 4. Round | 13/08/2016 | Dacia Chişinău | - | FC Academia UTM | 2:0 | ||||
| 5. Round | 20/08/2016 | FC Academia UTM | - | FC Milsami | 0:4 |  |
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| 7. Round | 11/09/2016 | Speranţa Nisporeni | - | FC Academia UTM | 0:1 | ||||
| 8. Round | 17/09/2016 | FC Academia UTM | - | FC Sheriff | 0:1 | ||||
| 10. Round | 30/09/2016 | FC Academia UTM | - | FC Zaria | 0:2 | ||||
| 11. Round | 15/10/2016 | Dinamo-Auto | - | FC Academia UTM | 3:1 | ||||
| 19. Round | 10/12/2016 | FC Sheriff | - | FC Academia UTM | 1:0 |
Moldova