| 7. Round | 23/10/2006 | Panathinaikos | - | AEK Athen | 1:2 | ||||
| 8. Round | 29/10/2006 | Iraklis Saloniki | - | Panathinaikos | 0:1 |  |
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| 9. Round | 05/11/2006 | Panathinaikos | - | Olympiakos Piraeus | 1:0 |  |
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| 10. Round | 12/11/2006 | Ergotelis | - | Panathinaikos | 0:1 | ||||
| 11. Round | 19/11/2006 | Atromitos | - | Panathinaikos | 0:4 | ||||
| 12. Round | 26/11/2006 | Panathinaikos | - | Apollon Kalamarias | 3:2 | ||||
| 13. Round | 03/12/2006 | Aris Saloniki | - | Panathinaikos | 1:0 | |
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| 14. Round | 09/12/2006 | Panathinaikos | - | AE Lárissa | 1:0 | ||||
| 15. Round | 17/12/2006 | AO Kerkyra | - | Panathinaikos | 3:1 | |
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| 16. Round | 07/01/2007 | Panathinaikos | - | AO Egaleo | 1:0 | |
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| 18. Round | 20/01/2007 | Skoda Xanthi | - | Panathinaikos | 0:0 | ||||
| 23. Round | 25/02/2007 | Panathinaikos | - | Iraklis Saloniki | 3:0 |
Spain