| 3. Round | 07/04/2000 | Lok. Nizhni Novgorod | - | Zenit St. Petersburg | 1:2 | ||||
| 5. Round | 21/04/2000 | FK Saturn | - | Zenit St. Petersburg | 1:0 | ||||
| 7. Round | 06/05/2000 | Torpedo Moskva | - | Zenit St. Petersburg | 1:1 | ||||
| 9. Round | 16/05/2000 | Zenit St. Petersburg | - | Rostselmash Rostov | 0:0 | ||||
| 17. Round | 21/05/2000 | Zenit St. Petersburg | - | Lok. Nizhni Novgorod | 2:0 | ||||
| 10. Round | 25/05/2000 | Alania Vladikavkaz | - | Zenit St. Petersburg | 1:0 | ||||
| 11. Round | 07/06/2000 | Zenit St. Petersburg | - | Uralan Elista | 3:0 | ||||
| 12. Round | 11/06/2000 | Lokomotiv Moskva | - | Zenit St. Petersburg | 1:1 | ||||
| 13. Round | 18/06/2000 | Zenit St. Petersburg | - | Krylia Sovetov | 3:0 | ||||
| 14. Round | 22/06/2000 | Spartak Moskva | - | Zenit St. Petersburg | 1:2 | ||||
| 18. Round | 04/07/2000 | Dinamo Moskva | - | Zenit St. Petersburg | 1:2 | ||||
| 29. Round | 04/11/2000 | Fakel Voronezh | - | Zenit St. Petersburg | 0:0 |
Russia