| Group B | 16/09/2008 | Panathinaikos | - | Inter | 0:2 | ||||
| Group B | 01/10/2008 | Anorthosis Famagusta | - | Panathinaikos | 3:1 |  |
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| Group B | 04/11/2008 | Werder Bremen | - | Panathinaikos | 0:3 | ||||
| Group B | 26/11/2008 | Inter | - | Panathinaikos | 0:1 | |
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| Group B | 09/12/2008 | Panathinaikos | - | Anorthosis Famagusta | 1:0 | ||||
| Round of 16 | 25/02/2009 | Villarreal CF | - | Panathinaikos | 1:1 | |
Greece