| 9. Round | 10/09/2024 | SKA-Khabarovsk | - | FK Chayka | 1:0 | ||||
| 10. Round | 15/09/2024 | FK Chayka | - | Shinnik Yaroslavl | 2:2 | ||||
| 12. Round | 29/09/2024 | FK Chayka | - | Baltika Kaliningrad | 0:1 |  |
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| 13. Round | 06/10/2024 | FK Sochi | - | FK Chayka | 5:0 | ||||
| 14. Round | 13/10/2024 | FK Chayka | - | FK Kamaz | 0:0 | ||||
| 15. Round | 21/10/2024 | FK Chayka | - | Arsenal Tula | 2:2 | ||||
| 16. Round | 27/10/2024 | Alania Vladikavkaz | - | FK Chayka | 2:3 | ||||
| 19. Round | 17/11/2024 | Shinnik Yaroslavl | - | FK Chayka | 0:0 | ||||
| 20. Round | 24/11/2024 | FK Chayka | - | SKA-Khabarovsk | 0:0 | ||||
| 21. Round | 01/12/2024 | FK Chayka | - | FK Ural | 1:1 | ||||
| 22. Round | 02/03/2025 | FK Chayka | - | FK Ufa | 1:1 | ||||
| 23. Round | 08/03/2025 | FK Kamaz | - | FK Chayka | 3:1 | ||||
| 25. Round | 23/03/2025 | FK Chayka | - | Chernomorets Novorossisk | 0:2 | ||||
| 26. Round | 30/03/2025 | Baltika Kaliningrad | - | FK Chayka | 4:0 | ||||
| 28. Round | 12/04/2025 | FK Chayka | - | Torpedo Moskva | 2:1 | ||||
| 29. Round | 19/04/2025 | Enisey Krasnoyarsk | - | FK Chayka | 0:0 | ||||
| 30. Round | 26/04/2025 | FK Chayka | - | FK Sochi | 0:2 | |
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| 34. Round | 24/05/2025 | Sokol Saratov | - | FK Chayka | 1:0 |
Ukraine